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From: jjung11@alaska.edu
Subject: Edetect_chain not working properly
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Date: Tue, 2 Apr 2019 04:30:02 +0200
From: jjung11@alaska.edu
To: xmmhelp@sciops.esa.int
Subject: Edetect_chain not working properly
Full_Name: Jaewoong Jung
Submission from: (NULL) (193.147.152.102)


Dear XMM helpdesk team

I ran the edetect_chain, following
https://www.cosmos.esa.int/web/xmm-newton/sas-thread-src-find .
But when I checked the result file, it was not correct. The sources were not
superposed on the image. (I'll attach the image soon.)
When I ran edetect_chain by single EPIC camera, it worked fine. (MOS1/MOS2/PN)

Here is my log:
MOS1clean.fits, etc are the SP filtered event files, and MOS1_image_full.fits ,
etc are image files generated from them.

Hyunjuss-Mac-Pro:0554500101 jjung11$ edetect_chain
imagesets='MOS1_image_full.fits MOS2_image_full.fits PN_image_full.fits'
eventsets='MOS1clean.fits MOS2clean.fits PNclean.fits'
attitudeset=1566_0554500101_AttHk.ds pimin='200 200 300' pimax='12000 12000
12000' ecf='2.0 2.0 2.0' eboxl_list='all_eboxlist_l.fits'
eboxm_list='all_eboxlist_m.fits'esp_nsplinenodes=16 eml_list='all_emllist.fits'
esen_mlmin=15

eexpmap:- Executing (routine): eexpmap imageset=PN_image_full.fits
attitudeset=1566_0554500101_AttHk.ds eventset=PNclean.fits
expimageset=PN_image_fullexp.fits withdetcoords=no withvignetting=yes
usefastpixelization=no usedlimap=no attrebin=4 pimin=300 pimax=12000  -w 1 -V 4

eexpmap:- eexpmap (eexpmap-4.12)  [xmmsas_20180620_1732-17.0.0] started: 
2019-04-02T02:02:37.000

eexpmap:- eexpmap (eexpmap-4.12)  [xmmsas_20180620_1732-17.0.0] ended:   
2019-04-02T02:02:42.000

emask:- Executing (routine): emask expimageset=PN_image_fullexp.fits
detmaskset=PN_image_fullmask.fits threshold1=0.3 threshold2=0.5
regionset=region.fits withregionset=no  -w 1 -V 4

emask:- emask (emask-2.15)  [xmmsas_20180620_1732-17.0.0] started: 
2019-04-02T02:02:42.000

emask:- emask (emask-2.15)  [xmmsas_20180620_1732-17.0.0] ended:   
2019-04-02T02:02:42.000

eexpmap:- Executing (routine): eexpmap imageset=MOS1_image_full.fits
attitudeset=1566_0554500101_AttHk.ds eventset=MOS1clean.fits
expimageset=MOS1_image_fullexp.fits withdetcoords=no withvignetting=yes
usefastpixelization=no usedlimap=no attrebin=4 pimin=200 pimax=12000  -w 1 -V 4

eexpmap:- eexpmap (eexpmap-4.12)  [xmmsas_20180620_1732-17.0.0] started: 
2019-04-02T02:02:43.000

** eexpmap: warning (NoExpoExt), Exposure extension not found

eexpmap:- CCF constituents accessed by the calibration server:

CifEntry{EMOS1, LINCOORD, 18, /Users/jjung11/ccf/EMOS1_LINCOORD_0018.CCF,
1998-01-01T00:00:00.000}

CifEntry{EPN, LINCOORD, 9, /Users/jjung11/ccf/EPN_LINCOORD_0009.CCF,
1998-01-01T00:00:00.000}

CifEntry{RGS1, LINCOORD, 8, /Users/jjung11/ccf/RGS1_LINCOORD_0008.CCF,
1998-01-01T00:00:00.000}

CifEntry{XMM, BORESIGHT, 28, /Users/jjung11/ccf/XMM_BORESIGHT_0028.CCF,
2000-01-01T00:00:00.000}

CifEntry{XMM, MISCDATA, 22, /Users/jjung11/ccf/XMM_MISCDATA_0022.CCF,
1999-01-01T00:00:00.000}

CifEntry{XRT1, XAREAEF, 9, /Users/jjung11/ccf/XRT1_XAREAEF_0009.CCF,
2000-01-13T00:00:00.000}





eexpmap:- eexpmap (eexpmap-4.12)  [xmmsas_20180620_1732-17.0.0] ended:   
2019-04-02T02:03:14.000

emask:- Executing (routine): emask expimageset=MOS1_image_fullexp.fits
detmaskset=MOS1_image_fullmask.fits threshold1=0.3 threshold2=0.5
regionset=region.fits withregionset=no  -w 1 -V 4

emask:- emask (emask-2.15)  [xmmsas_20180620_1732-17.0.0] started: 
2019-04-02T02:03:14.000

emask:- emask (emask-2.15)  [xmmsas_20180620_1732-17.0.0] ended:   
2019-04-02T02:03:14.000

eexpmap:- Executing (routine): eexpmap imageset=MOS2_image_full.fits
attitudeset=1566_0554500101_AttHk.ds eventset=MOS2clean.fits
expimageset=MOS2_image_fullexp.fits withdetcoords=no withvignetting=yes
usefastpixelization=no usedlimap=no attrebin=4 pimin=200 pimax=12000  -w 1 -V 4

eexpmap:- eexpmap (eexpmap-4.12)  [xmmsas_20180620_1732-17.0.0] started: 
2019-04-02T02:03:14.000

eexpmap:- CCF constituents accessed by the calibration server:

CifEntry{EMOS2, LINCOORD, 18, /Users/jjung11/ccf/EMOS2_LINCOORD_0018.CCF,
1998-01-01T00:00:00.000}

CifEntry{EPN, LINCOORD, 9, /Users/jjung11/ccf/EPN_LINCOORD_0009.CCF,
1998-01-01T00:00:00.000}

CifEntry{RGS2, LINCOORD, 8, /Users/jjung11/ccf/RGS2_LINCOORD_0008.CCF,
1998-01-01T00:00:00.000}

CifEntry{XMM, BORESIGHT, 28, /Users/jjung11/ccf/XMM_BORESIGHT_0028.CCF,
2000-01-01T00:00:00.000}

CifEntry{XMM, MISCDATA, 22, /Users/jjung11/ccf/XMM_MISCDATA_0022.CCF,
1999-01-01T00:00:00.000}

CifEntry{XRT2, XAREAEF, 10, /Users/jjung11/ccf/XRT2_XAREAEF_0010.CCF,
2000-01-13T00:00:00.000}





eexpmap:- eexpmap (eexpmap-4.12)  [xmmsas_20180620_1732-17.0.0] ended:   
2019-04-02T02:03:49.000

emask:- Executing (routine): emask expimageset=MOS2_image_fullexp.fits
detmaskset=MOS2_image_fullmask.fits threshold1=0.3 threshold2=0.5
regionset=region.fits withregionset=no  -w 1 -V 4

emask:- emask (emask-2.15)  [xmmsas_20180620_1732-17.0.0] started: 
2019-04-02T02:03:49.000

emask:- emask (emask-2.15)  [xmmsas_20180620_1732-17.0.0] ended:   
2019-04-02T02:03:49.000

eboxdetect:- Executing (routine): eboxdetect bkgimagesets=bgimage.fits usemap=no
usematchedfilter=no detmasksets='PN_image_fullmask.f

Message of length 16341 truncated

Followup 1

Compose reply
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From: Jaewoong Jung <jjung11@alaska.edu>
Date: Mon, 1 Apr 2019 18:33:02 -0800
Subject: Re: Edetect_chain not working properly (PR#84822)
To: Simone Migliari <xmmhelp@sciops.esa.int>
--000000000000764466058582f565
Content-Type: multipart/alternative; boundary="000000000000764463058582f563"

--000000000000764463058582f563
Content-Type: text/plain; charset="UTF-8"

The srcdisplay result was like this:

On Mon, Apr 1, 2019 at 6:31 PM <xmmhelp@sciops.esa.int> wrote:

> European  Space  Agency    -    XMM-Newton  Science  Operations  Centre
> -----------------------------------------------------------------------
>
> Dear colleague,
>
> Thank you for submitting your request. We shall deal with it as quickly
> as possible.
>
> Please  note that both your incoming mail and  the answer to it will be
> visible via  the  XMM-Newton Helpdesk  web interface, unless you marked
> your request as PRIVATE.
>
> You can enquire about its status by following this URL:
>
>
> http://xmm.esac.esa.int/xmmhelp?findid=84822
>
> Please note that  your feedback is extremely  useful  for us to improve
> the service  provided to the  Scientific  Community. When  you consider
> that  your  problem  or  question  has  been answered, please visit the
> following web address and send us your comments:
>
>
>
> https://xmm-tools.cosmos.esa.int/external/xmm_user_support/user_feedback/ufeedback.php?service=helpdesk&name_ref=84822
>
>
> Thank you very much for your attention and time.
>
>
> This message is intended only for the recipient(s) named above. It may
> contain proprietary information and/or
> protected content. Any unauthorised disclosure, use, retention or
> dissemination is prohibited. If you have received
> this e-mail in error, please notify the sender immediately. ESA applies
> appropriate organisational measures to protect
> personal data, in case of data privacy queries, please contact the ESA
> Data Protection Officer (dpo@esa.int).
>
>
>

--000000000000764463058582f563
Content-Type: text/html; charset="UTF-8"
Content-Transfer-Encoding: quoted-printable

<div dir=3D"ltr">The srcdisplay result was like
this:</div><br><div class=
=3D"gmail_quote"><div dir=3D"ltr" class=3D"gmail_attr">On Mon, Apr 1,
2019 =
at 6:31 PM &lt;<a
href=3D"mailto:xmmhelp@sciops.esa.int">xmmhelp@sciops.esa=
.int</a>&gt; wrote:<br></div><blockquote
class=3D"gmail_quote" style=3D"mar=
gin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1=
ex">European=C2=A0 Space=C2=A0 Agency=C2=A0 =C2=A0 -=C2=A0 =C2=A0 XMM-Newto=
n=C2=A0 Science=C2=A0 Operations=C2=A0 Centre<br>
----------------------------------------------------------------------- <br=
>
<br>
Dear colleague,<br>
<br>
Thank you for submitting your request. We shall deal with it as
quickly<br>
as possible. <br>
<br>
Please=C2=A0 note that both your incoming mail and=C2=A0 the answer to it w=
ill be <br>
visible via=C2=A0 the=C2=A0 XMM-Newton Helpdesk=C2=A0 web interface, unless=
 you marked <br>
your request as PRIVATE.<br>
<br>
You can enquire about its status by following this URL:<br>
<br>
<br>
<a href=3D"http://xmm.esac.esa.int/xmmhelp?findid=3D84822" rel=3D"noreferre=
r" target=3D"_blank">http://xmm.esac.esa.int/xmmhelp?findid=3D84822</a>=C2=
=A0 <br>
<br>
Please note that=C2=A0 your feedback is extremely=C2=A0 useful=C2=A0 for us=
 to improve<br>
the service=C2=A0 provided to the=C2=A0 Scientific=C2=A0 Community. When=C2=
=A0 you consider <br>
that=C2=A0 your=C2=A0 problem=C2=A0 or=C2=A0 question=C2=A0 has=C2=A0 been =
answered, please visit the <br>
following web address and send us your comments:<br>
<br>
<br>
<a href=3D"https://xmm-tools.cosmos.esa.int/external/xmm_user_support/user_=
feedback/ufeedback.php?service=3Dhelpdesk&amp;name_ref=3D84822" rel=3D"nore=
ferrer" target=3D"_blank">https://xmm-tools.cosmos.esa.int/external/xmm_use=
r_support/user_feedback/ufeedback.php?service=3Dhelpdesk&amp;name_ref=3D848=
22</a>=C2=A0 <br>
<br>
Thank you very much for your attention and time. <br>
<br>
<br>
This message is intended only for the recipient(s) named above. It may cont=
ain proprietary information and/or<br>
protected content. Any unauthorised disclosure, use, retention or dissemina=
tion is prohibited. If you have received<br>
this e-mail in error, please notify the sender immediately. ESA applies app=
ropriate organisational measures to protect<br>
personal data, in case of data privacy queries, please contact the ESA Data=
 Protection Officer (<a href=3D"mailto:dpo@esa.int"
target=3D"_blank">dpo@e=
sa.int</a>).<br>
<br>
<br>
</blockquote></div>

--000000000000764463058582f563--
--000000000000764466058582f565
Content-Type: image/png; name="Screen Shot 2019-04-01 at 6.20.44 PM.png"
Content-Dispositio

Message of length 172658 truncated


Reply 1

Resend
From: Nora Loiseau <xmmhelp@sciops.esa.int>
To: jjung11@alaska.edu
Subject: Re: Edetect_chain not working properly (PR#84822)
Date: Wed Apr  3 17:18:45 2019
Dear Dr. Jung,

I will try to reproduce as soon as I have some time to do it. In the meantime
please
try yourself to re-do the work from scratch, in an empty directory, checking the
resulting files of each step, and inform me if you manage to find the origin of
the problem.

Best regards,

Nora

> 
> Dear XMM helpdesk team
> 
> I ran the edetect_chain, following
> https://www.cosmos.esa.int/web/xmm-newton/sas-thread-src-find .
> But when I checked the result file, it was not correct. The sources were
not
> superposed on the image. (I'll attach the image soon.)
> When I ran edetect_chain by single EPIC camera, it worked fine.
(MOS1/MOS2/PN)
> 
> Here is my log:
> MOS1clean.fits, etc are the SP filtered event files, and
MOS1_image_full.fits
,
> etc are image files generated from them.
> 
> Hyunjuss-Mac-Pro:0554500101 jjung11$ edetect_chain
> imagesets='MOS1_image_full.fits MOS2_image_full.fits PN_image_full.fits'
> eventsets='MOS1clean.fits MOS2clean.fits PNclean.fits'
> attitudeset=1566_0554500101_AttHk.ds pimin='200 200 300' pimax='12000
12000
> 12000' ecf='2.0 2.0 2.0' eboxl_list='all_eboxlist_l.fits'
> eboxm_list='all_eboxlist_m.fits'esp_nsplinenodes=16
eml_list='all_emllist.fits'
> esen_mlmin=15
> 
> eexpmap:- Executing (routine): eexpmap imageset=PN_image_full.fits
> attitudeset=1566_0554500101_AttHk.ds eventset=PNclean.fits
> expimageset=PN_image_fullexp.fits withdetcoords=no withvignetting=yes
> usefastpixelization=no usedlimap=no attrebin=4 pimin=300 pimax=12000  -w 1
-V
4
> 
> eexpmap:- eexpmap (eexpmap-4.12)  [xmmsas_20180620_1732-17.0.0] started: 
> 2019-04-02T02:02:37.000
> 
> eexpmap:- eexpmap (eexpmap-4.12)  [xmmsas_20180620_1732-17.0.0] ended:   
> 2019-04-02T02:02:42.000
> 
> emask:- Executing (routine): emask expimageset=PN_image_fullexp.fits
> detmaskset=PN_image_fullmask.fits threshold1=0.3 threshold2=0.5
> regionset=region.fits withregionset=no  -w 1 -V 4
> 
> emask:- emask (emask-2.15)  [xmmsas_20180620_1732-17.0.0] started: 
> 2019-04-02T02:02:42.000
> 
> emask:- emask (emask-2.15)  [xmmsas_20180620_1732-17.0.0] ended:   
> 2019-04-02T02:02:42.000
> 
> eexpmap:- Executing (routine): eexpmap imageset=MOS1_image_full.fits
> attitudeset=1566_0554500101_AttHk.ds eventset=MOS1clean.fits
> expimageset=MOS1_image_fullexp.fits withdetcoords=no withvignetting=yes
> usefastpixelization=no usedlimap=no attrebin=4 pimin=200 pimax=12000  -w 1
-V
4
> 
> eexpmap:- eexpmap (eexpmap-4.12)  [xmmsas_20180620_1732-17.0.0] started: 
> 2019-04-02T02:02:43.000
> 
> ** eexpmap: warning (NoExpoExt), Exposure extension not found
> 
> eexpmap:- CCF constituents accessed by the calibration server:
> 
> CifEntry{EMOS1, LINCOORD, 18, /Users/jjung11/ccf/EMOS1_LINCOORD_0018.CCF,
> 1998-01-01T00:00:00.000}
> 
> CifEntry{EPN, LINCOORD, 9, /Users/jjung11/ccf/EPN_LINCOORD_0009.CCF,
> 1998-01-01T00:00:00.000}
> 
> CifEntry{RGS1, LINCOORD, 8, /Users/jjung11/ccf/RGS1_LINCOORD_0008.CCF,
> 1998-01-01T00:00:00.000}
> 
> CifEntry{XMM, BORESIGHT, 28, /Users/jjung11/ccf/XMM_BORESIGHT_0028.CCF,
> 2000-01-01T00:00:00.000}
> 
> CifEntry{XMM, MISCDATA, 22, /Users/jjung11/ccf/XMM_MISCDATA_0022.CCF,
> 1999-01-01T00:00:00.000}
> 
> CifEntry{XRT1, XAREAEF, 9, /Users/jjung11/ccf/XRT1_XAREAEF_0009.CCF,
> 2000-01-13T00:00:00.000}
> 
> 
> 
> 
> 
> eexpmap:- eexpmap (eexpmap-4.12)  [xmmsas_20180620_1732-17.0.0] ended:   
> 2019-04-02T02:03:14.000
> 
> emask:- Executing (routine): emask expimageset=MOS1_image_fullexp.fits
> detmaskset=MOS1_image_fullmask.fits threshold1=0.3 threshold2=0.5
> regionset=region.fits withregionset=no  -w 1 -V 4
> 
> emask:- emask (emask-2.15)  [xmmsas_20180620_1732-17.0.0] started: 
> 2019-04-02T02:03:14.000
> 
> emask:- emask (emask-2.15)  [xmmsas_20180620_1732-17.0.0] ended:   
> 2019-04-02T02:03:14.000
> 
> eexpmap:- Executing (routine): eexpmap imageset=MOS2_image_full.fits
> attitudeset=1566_0554500101_AttHk.ds eventset=MOS2clean.fits
> expimageset=MOS2_image_fullexp.fits withdetcoords=no withvignetting=yes
> usefastpixelization=no usedlimap=no attrebin=4 pimin=200 pimax=12000  -w 1
-V
4
> 
> eexpmap:- eexpmap (eexpmap-4.12)  [xmmsas_20180620_1732-17.0.0] started: 
> 2019-04-02T02:03:14.000
> 
> eexpmap:- CCF constituents accessed by the calibration server:
> 
> CifEntry{EMOS2, LINCOORD, 18, /Users/jjung11/ccf/EMOS2_LINCOORD_0018.CCF,
> 1998-01-01T00:00:00.000}
> 
> CifEntry{EPN, LINCOORD, 9, /Users/jjung11/ccf/EPN_LINCOORD_0009.CCF,
> 1998-01-01T00:00:00.000}
> 
> CifEntry{RGS2, LINCOORD, 8, /Users/jjung11/ccf/RGS2_LINCOORD_0008.CCF,
> 1998-01-01T00:00:00.000}
> 
> CifEntry{

Message of length 19169 truncated


Followup 2

Compose reply
Download message
Date: Mon, 08 Apr 2019 11:30:30 +0200
From: Nora Loiseau <Nora.Loiseau@sciops.esa.int>
To: Jaewoong Jung <jjung11@alaska.edu>
CC: helpdesk xmmhelp <xmmhelp@sciops.esa.int>
Subject: Re: Re: Edetect_chain not working properly (PR#84822)
This is a multi-part message in MIME format.
--------------090900020500030501030902
Content-Type: multipart/alternative;
 boundary="------------060601040701070907020101"


--------------060601040701070907020101
Content-Type: text/plain; charset=UTF-8; format=flowed
Content-Transfer-Encoding: quoted-printable

Dear Jaewoong,

We cannot reproduce your problem. The image attached has been created fol=
lowing=20
exactly the thread at:

https://www.cosmos.esa.int/web/xmm-newton/sas-thread-src-find =20

Please try again, taking very much care of the file names that you use in=
 each step.

Best regards,

Nora


On 04/02/2019 04:33 AM, Jaewoong Jung wrote:
> The srcdisplay result was like this:
>
> On Mon, Apr 1, 2019 at 6:31 PM <xmmhelp@sciops.esa.int=20
> <mailto:xmmhelp@sciops.esa.int>> wrote:
>
>     European Space  Agency    -    XMM-Newton  Science  Operations  Cen=
tre
>     -------------------------------------------------------------------=
----
>
>     Dear colleague,
>
>     Thank you for submitting your request. We shall deal with it as qui=
ckly
>     as possible.
>
>     Please  note that both your incoming mail and  the answer to it wil=
l be
>     visible via  the  XMM-Newton Helpdesk  web interface, unless you ma=
rked
>     your request as PRIVATE.
>
>     You can enquire about its status by following this URL:
>
>
>     http://xmm.esac.esa.int/xmmhelp?findid=3D84822
>
>     Please note that  your feedback is extremely  useful  for us to imp=
rove
>     the service  provided to the  Scientific  Community. When  you cons=
ider
>     that  your  problem  or  question  has  been answered, please visit=
 the
>     following web address and send us your comments:
>
>
>     https://xmm-tools.cosmos.esa.int/external/xmm_user_support/user_fee=
dback/ufeedback.php?service=3Dhelpdesk&name_ref=3D84822
>
>
>     Thank you very much for your attention and time.
>
>
>     This message is intended only for the recipient(s) named above. It =
may
>     contain proprietary information and/or
>     protected content. Any unauthorised disclosure, use, retention or
>     dissemination is prohibited. If you have received
>     this e-mail in error, please notify the sender immediately. ESA app=
lies
>     appropriate organisational measures to protect
>     personal data, in case of data privacy queries, please contact the =
ESA
>     Data Protection Officer (dpo@esa.int <mailto:dpo@esa.int>).
>
>


--=20
Dr. Nora Loiseau,
XMM-Newton Archive Scientist and USG,

XMM-Newton Science Operations Centre,
European Space Astronomy Centre (ESAC/ESA)
Camino Bajo del Castillo s/n, Urb. Villafranca del Castillo,
E-28692 Villanueva de la Ca=C3=B1ada, Madrid, Spain

Nora.Loiseau@sciops.esa.int | www.esa.int
Tel. +34 918 131 298

Quasar Science Resources for ESA - European Space Agency


--------------060601040701070907020101
Content-Type: text/html; charset=UTF-8
Content-Transfer-Encoding: quoted-printable

<html>
  <head>
    <meta content=3D"text/html; charset=3DUTF-8" http-equiv=3D"Content-Ty=
pe">
  </head>
  <body bgcolor=3D"#FFFFFF" text=3D"#000000">
    <div class=3D"moz-cite-prefix">Dear Jaewoong,<br>
      <br>
      We cannot reproduce your problem. The image attached has been
      created following exactly the thread at:<br>
      <pre><a
href=3D"https://www.cosmos.esa.int/web/xmm-newton/sas-threa=
d-src-find">https://www.cosmos.esa.int/web/xmm-newton/sas-thread-src-find=
</a>=20

Please try again, taking very much care of the file names that you use in=
 each step.

Best regards,

Nora

</pre>
      <br>
      On 04/02/2019 04:33 AM, Jaewoong Jung wrote:<br>
    </div>
    <blockquote
cite=3D"mid:%3CCACqvhK8kaxjJdrk=3D2T2U6Ra0D5bkYjYviKFuTXFVe7bp3Exn3w@mail=
.gmail.com%3E"
      type=3D"cite">
      <div dir=3D"ltr">The srcdisplay result was like this:</div>
      <br>
      <div class=3D"gmail_quote">
        <div dir=3D"ltr" class=3D"gmail_attr">On Mon, Apr 1, 2019 at 6:31=
 PM
          &lt;<a moz-do-not-send=3D"true"
            href=3D"mailto:xmmhelp@sciops.esa.int">xmmhelp@sciops.esa.int=
</a>&gt;
          wrote:<br>
        </div>
        <blockquote class=3D"gmail_quote" style=3D"margin:0px 0px 0px
          0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">=
European=C2=A0
          Space=C2=A0 Agency=C2=A0 =C2=A0 -=C2=A0 =C2=A0 XMM-Newton=C2=A0=
 Science=C2=A0 Operations=C2=A0 Centre<br>
          ---------------------------------------------------------------=
--------
          <br>
          <br>
          Dear colleague,<br>
          <br>
          Thank you for submitting your request. We shall deal with it
          as quickly<br>
    

Message of length 1128710 truncated


Followup 3

Compose reply
Download message
Date: Tue, 09 Apr 2019 10:31:17 +0200
From: Nora Loiseau <Nora.Loiseau@sciops.esa.int>
To: helpdesk xmmhelp <xmmhelp@sciops.esa.int>
Subject: Fwd: Re: Re: Edetect_chain not working properly (PR#84822)
This is a multi-part message in MIME format.
--------------000608020106000805030307
Content-Type: text/plain; charset=UTF-8; format=flowed
Content-Transfer-Encoding: quoted-printable




-------- Original Message --------
Subject: 	Re: Re: Edetect_chain not working properly (PR#84822)
Date: 	Mon, 8 Apr 2019 15:31:33 -0800
From: 	Jaewoong Jung <jjung11@alaska.edu>
To: 	Nora Loiseau <Nora.Loiseau@sciops.esa.int>



Dear Nora,

I tried to follow everything correctly starting with an empty directory. =
(Last=20
time I didn't need the each energy band data so put only full images.)
But at the detection step, SAS stopped to work at emldetect. It hung ther=
e at=20
like 10 minutes and I had to use Ctrl-C to stop it. Can you help me with =
this=20
please?

Here is my log:
I should change

HYUNJU-MACPRO:0554500101_2 jjung11$ edetect_chain imagesets=3D' \

"m1_image_b1.fits" "m1_image_b2.fits" "m1_image_b3.fits" "m1_image_b4.fit=
s"=20
"m1_image_b5.fits" \

"m2_image_b1.fits" "m2_image_b2.fits" "m2_image_b3.fits" "m2_image_b4.fit=
s"=20
"m2_image_b5.fits" \

"pn_image_b1.fits" "pn_image_b2.fits" "pn_image_b3.fits" "pn_image_b4.fit=
s"=20
"pn_image_b5.fits"' eventsets=3D'MOS1clean.fits MOS2clean.fits PNclean.fi=
ts'=20
attitudeset=3D1566_0554500101_AttHk.ds pimin=3D'200 500 1000 2000 4500 20=
0 500 1000=20
2000 4500 200 500 1000 2000 4500' pimax=3D'500 1000 2000 4500 12000 500 1=
000 2000=20
4500 12000 500 1000 2000 4500 12000' ecf=3D'1.734 1.746 2.041 0.737 0.145=
 0.991=20
1.387 1.789 0.703 0.150 9.525 8.121 5.867 1.953 0.578'=20
eboxl_list=3D'all_eboxlist_l.fits' eboxm_list=3D'all_eboxlist_m.fits'=20
esp_nsplinenodes=3D16 eml_list=3D'all_emllist.fits' esen_mlmin=3D15

eexpmap:- Executing (routine): eexpmap imageset=3Dpn_image_b1.fits=20
attitudeset=3D1566_0554500101_AttHk.ds eventset=3DPNclean.fits=20
expimageset=3D'pn_image_b1exp.fits pn_image_b2exp.fits pn_image_b3exp.fit=
s=20
pn_image_b4exp.fits pn_image_b5exp.fits' withdetcoords=3Dno withvignettin=
g=3Dyes=20
usefastpixelization=3Dno usedlimap=3Dno attrebin=3D4 pimin=3D'200 500 100=
0 2000 4500'=20
pimax=3D'500 1000 2000 4500 12000'-w 1 -V 4

eexpmap:- eexpmap (eexpmap-4.12)[xmmsas_20180620_1732-17.0.0]=20
started:2019-04-08T23:12:41.000

eexpmap:- eexpmap (eexpmap-4.12)[xmmsas_20180620_1732-17.0.0]=20
ended:2019-04-08T23:12:47.000

emask:- Executing (routine): emask expimageset=3Dpn_image_b1exp.fits=20
detmaskset=3Dpn_image_b1mask.fits threshold1=3D0.3 threshold2=3D0.5=20
regionset=3Dregion.fits withregionset=3Dno-w 1 -V 4

emask:- emask (emask-2.15)[xmmsas_20180620_1732-17.0.0]=20
started:2019-04-08T23:12:47.000

emask:- emask (emask-2.15)[xmmsas_20180620_1732-17.0.0]=20
ended:2019-04-08T23:12:48.000

eexpmap:- Executing (routine): eexpmap imageset=3Dm1_image_b1.fits=20
attitudeset=3D1566_0554500101_AttHk.ds eventset=3DMOS1clean.fits=20
expimageset=3D'm1_image_b1exp.fits m1_image_b2exp.fits m1_image_b3exp.fit=
s=20
m1_image_b4exp.fits m1_image_b5exp.fits' withdetcoords=3Dno withvignettin=
g=3Dyes=20
usefastpixelization=3Dno usedlimap=3Dno attrebin=3D4 pimin=3D'200 500 100=
0 2000 4500'=20
pimax=3D'500 1000 2000 4500 12000'-w 1 -V 4

eexpmap:- eexpmap (eexpmap-4.12)[xmmsas_20180620_1732-17.0.0]=20
started:2019-04-08T23:12:48.000

** eexpmap: warning (NoExpoExt), Exposure extension not found

eexpmap:- CCF constituents accessed by the calibration server:

CifEntry{EMOS1, LINCOORD, 18, /Users/jjung11/ccf/EMOS1_LINCOORD_0018.CCF,=
=20
1998-01-01T00:00:00.000}

CifEntry{EPN, LINCOORD, 9, /Users/jjung11/ccf/EPN_LINCOORD_0009.CCF,=20
1998-01-01T00:00:00.000}

CifEntry{RGS1, LINCOORD, 8, /Users/jjung11/ccf/RGS1_LINCOORD_0008.CCF,=20
1998-01-01T00:00:00.000}

CifEntry{XMM, BORESIGHT, 28, /Users/jjung11/ccf/XMM_BORESIGHT_0028.CCF,=20
2000-01-01T00:00:00.000}

CifEntry{XMM, MISCDATA, 22, /Users/jjung11/ccf/XMM_MISCDATA_0022.CCF,=20
1999-01-01T00:00:00.000}

CifEntry{XRT1, XAREAEF, 9, /Users/jjung11/ccf/XRT1_XAREAEF_0009.CCF,=20
2000-01-13T00:00:00.000}



eexpmap:- eexpmap (eexpmap-4.12)[xmmsas_20180620_1732-17.0.0]=20
ended:2019-04-08T23:13:21.000

emask:- Executing (routine): emask expimageset=3Dm1_image_b1exp.fits=20
detmaskset=3Dm1_image_b1mask.fits threshold1=3D0.3 threshold2=3D0.5=20
regionset=3Dregion.fits withregionset=3Dno-w 1 -V 4

emask:- emask (emask-2.15)[xmmsas_20180620_1732-17.0.0]=20
started:2019-04-08T23:13:21.000

emask:- emask (emask-2.15)[xmmsas_20180620_1732-17.0.0]=20
ended:2019-04-08T23:13:21.000

eexpmap:- Executing (routine): eexpmap imageset=3Dm2_image_b1.fits=20
attitudeset=3D1566_0554500101_AttHk.ds eventset=3DMOS2clean.fits=20
expimageset=3D'm2_image_b1exp.fits m2_image_b2exp.fits m2_image_b3exp.fit=
s=20
m2_image_b4exp.fits m2_image_b5exp.fits' withdetcoords=3Dno withvignettin=
g=3Dyes=20
usefastpixelization=3Dno usedlimap=3Dno attrebin=3D4 pimin=3D'200 500 100=
0 2000 4500'=20
pimax=3D'500 1000 2000 4500 12000'-w 1 -V 4

eexpmap:- eexpmap (eexpmap-4.12)[xmmsas_20180620_1732-17.0.0]=20
started:2019-04-08T23:13:21.000

eexpmap:-

Message of length 129771 truncated


Reply 2

Resend
From: Nora Loiseau <xmmhelp@sciops.esa.int>
To: jjung11@alaska.edu
Subject: Re: Edetect_chain not working properly (PR#84822)
Date: Tue Apr  9 10:40:46 2019
Dear Jaewoong

You have to allow much more time for the execution, I append here the log of my
session
for you to have an idea of the times.

Cheers,

Nora

[nloiseau@xmmwl71 pps]$ edetect_chain imagesets='"m1_image_b1.fits"
"m1_image_b2.fits" "m1_image_b3.fits" "m1_image_b4.fits" "m1_image_b5.fits"
"m2_image_b1.fits" "m2_image_b2.fits" "m2_image_b3.fits" "m2_image_b4.fits"
"m2_image_b5.fits" "pn_image_b1.fits" "pn_image_b2.fits" "pn_image_b3.fits"
"pn_image_b4.fits" "pn_image_b5.fits"' eventsets='MOS1clean.fits MOS2clean.fits
PNclean.fits' attitudeset=AttHk.ds pimin='200 500 1000 2000 4500 200 500 1000
2000 4500 200 500 1000 2000 4500' pimax='500 1000 2000 4500 12000 500 1000 2000
4500 12000 500 1000 2000 4500 12000' ecf='1.734 1.746 2.041 0.737 0.145 0.991
1.387 1.789 0.703 0.150 9.525 8.121 5.867 1.953 0.578'
eboxl_list='all_eboxlist_l.fits' eboxm_list='all_eboxlist_m.fits'
esp_nsplinenodes=16 eml_list='all_emllist.fits' esen_mlmin=15
eexpmap:- Executing (routine): eexpmap imageset=pn_image_b1.fits
attitudeset=AttHk.ds eventset=PNclean.fits expimageset='pn_image_b1exp.fits
pn_image_b2exp.fits pn_image_b3exp.fits pn_image_b4exp.fits pn_image_b5exp.fits'
withdetcoords=no withvignetting=yes usefastpixelization=no usedlimap=no
attrebin=4 pimin='200 500 1000 2000 4500' pimax='500 1000 2000 4500 12000'  -w 1
-V 4
eexpmap:- eexpmap (eexpmap-4.12)  [xmmsas_20180620_1732-17.0.0] started: 
2019-04-05T16:05:22.000
eexpmap:- eexpmap (eexpmap-4.12)  [xmmsas_20180620_1732-17.0.0] ended:   
2019-04-05T16:05:31.000
emask:- Executing (routine): emask expimageset=pn_image_b1exp.fits
detmaskset=pn_image_b1mask.fits threshold1=0.3 threshold2=0.5
regionset=region.fits withregionset=no  -w 1 -V 4
emask:- emask (emask-2.15)  [xmmsas_20180620_1732-17.0.0] started: 
2019-04-05T16:05:31.000
emask:- emask (emask-2.15)  [xmmsas_20180620_1732-17.0.0] ended:   
2019-04-05T16:05:31.000
eexpmap:- Executing (routine): eexpmap imageset=m1_image_b1.fits
attitudeset=AttHk.ds eventset=MOS1clean.fits expimageset='m1_image_b1exp.fits
m1_image_b2exp.fits m1_image_b3exp.fits m1_image_b4exp.fits m1_image_b5exp.fits'
withdetcoords=no withvignetting=yes usefastpixelization=no usedlimap=no
attrebin=4 pimin='200 500 1000 2000 4500' pimax='500 1000 2000 4500 12000'  -w 1
-V 4
eexpmap:- eexpmap (eexpmap-4.12)  [xmmsas_20180620_1732-17.0.0] started: 
2019-04-05T16:05:31.000
** eexpmap: warning (NoExpoExt), Exposure extension not found
eexpmap:- CCF constituents accessed by the calibration server:
CifEntry{EMOS1, LINCOORD, 18, /ccf/valid/EMOS1_LINCOORD_0018.CCF,
1998-01-01T00:00:00.000}
CifEntry{EPN, LINCOORD, 9, /ccf/valid/EPN_LINCOORD_0009.CCF,
1998-01-01T00:00:00.000}
CifEntry{RGS1, LINCOORD, 8, /ccf/valid/RGS1_LINCOORD_0008.CCF,
1998-01-01T00:00:00.000}
CifEntry{XMM, BORESIGHT, 29, /ccf/valid/XMM_BORESIGHT_0029.CCF,
2000-01-01T00:00:00.000}
CifEntry{XMM, MISCDATA, 22, /ccf/valid/XMM_MISCDATA_0022.CCF,
1999-01-01T00:00:00.000}
CifEntry{XRT1, XAREAEF, 9, /ccf/valid/XRT1_XAREAEF_0009.CCF,
2000-01-13T00:00:00.000}


eexpmap:- eexpmap (eexpmap-4.12)  [xmmsas_20180620_1732-17.0.0] ended:   
2019-04-05T16:06:21.000
emask:- Executing (routine): emask expimageset=m1_image_b1exp.fits
detmaskset=m1_image_b1mask.fits threshold1=0.3 threshold2=0.5
regionset=region.fits withregionset=no  -w 1 -V 4
emask:- emask (emask-2.15)  [xmmsas_20180620_1732-17.0.0] started: 
2019-04-05T16:06:21.000
emask:- emask (emask-2.15)  [xmmsas_20180620_1732-17.0.0] ended:   
2019-04-05T16:06:21.000
eexpmap:- Executing (routine): eexpmap imageset=m2_image_b1.fits
attitudeset=AttHk.ds eventset=MOS2clean.fits expimageset='m2_image_b1exp.fits
m2_image_b2exp.fits m2_image_b3exp.fits m2_image_b4exp.fits m2_image_b5exp.fits'
withdetcoords=no withvignetting=yes usefastpixelization=no usedlimap=no
attrebin=4 pimin='200 500 1000 2000 4500' pimax='500 1000 2000 4500 12000'  -w 1
-V 4
eexpmap:- eexpmap (eexpmap-4.12)  [xmmsas_20180620_1732-17.0.0] started: 
2019-04-05T16:06:21.000
eexpmap:- CCF constituents accessed by the calibration server:
CifEntry{EMOS2, LINCOORD, 18, /ccf/valid/EMOS2_LINCOORD_0018.CCF,
1998-01-01T00:00:00.000}
CifEntry{EPN, LINCOORD, 9, /ccf/valid/EPN_LINCOORD_0009.CCF,
1998-01-01T00:00:00.000}
CifEntry{RGS2, LINCOORD, 8, /ccf/valid/RGS2_LINCOORD_0008.CCF,
1998-01-01T00:00:00.000}
CifEntry{XMM, BORESIGHT, 29, /ccf/valid/XMM_BORESIGHT_0029.CCF,
2000-01-01T00:00:00.000}
CifEntry{XMM, MISCDATA, 22, /ccf/valid/XMM_MISCDATA_0022.CCF,
1999-01-01T00:00:00.000}
CifEntry{XRT2, XAREAEF, 10, /ccf/valid/XRT2_XAREAEF_0010.CCF,
2000-01-13T00:00:00.000}


eexpmap:- eexpmap (eexpmap-4.12)  [xmmsas_20180620_1732-17.0.0] ended:   
2019-04-05T16:07:17.000
emask:- Executing (routine): emask expimageset=m2_image_b1exp.fits
detmaskset=m2_image_b1mask.fits threshold1=0.3 threshold2=0.5
regionset=region.fits withregionset=no  -w 1 -V 4
emask:- emask (emask-2.15)  [xmmsas_20180620_1732-17.0.0] started: 
2019-04-05T16:07:17.000
emask:- emask (emask-2.15)

Message of length 63959 truncated


Followup 4

Compose reply
Download message
From: Jaewoong Jung <jjung11@alaska.edu>
Date: Tue, 9 Apr 2019 12:51:53 -0800
Subject: Re: Edetect_chain not working properly (PR#84822)
To: Nora Loiseau <xmmhelp@sciops.esa.int>
--00000000000037dd3b05861f20e9
Content-Type: multipart/alternative; boundary="00000000000037dd3a05861f20e7"

--00000000000037dd3a05861f20e7
Content-Type: text/plain; charset="UTF-8"

Dear Nora,

Thanks for your help.
However, I'm still experiencing the same problem.
Now it runs smoothly, actually it takes much shorter than what you
showed me, but still sources are displaced. I started with the empty
folder. I attached mosaic.ds and all_emllist.fits.

Here is my log:

(base) HYUNJU-MACPRO:0554500101_2 jjung11$ edetect_chain imagesets='
"m1_image_b1.fits" "m1_image_b2.fits" "m1_image_b3.fits" "m1_image_b4.fits"
"m1_image_b5.fits" "m2_image_b1.fits" "m2_image_b2.fits" "m2_image_b3.fits"
"m2_image_b4.fits" "m2_image_b5.fits" "pn_image_b1.fits" "pn_image_b2.fits"
"pn_image_b3.fits" "pn_image_b4.fits" "pn_image_b5.fits"'
eventsets='MOS1clean.fits
MOS2clean.fits PNclean.fits' attitudeset=1566_0554500101_AttHk.ds   pimin='200
500 1000 2000 4500 200 500 1000 2000 4500 200 500 1000 2000 4500'   pimax='500
1000 2000 4500 12000 500 1000 2000 4500 12000 500 1000 2000 4500 12000'
ecf='1.734 1.746 2.041 0.737 0.145 0.991 1.387 1.789 0.703 0.150 9.525
8.121 5.867 1.953 0.578'   eboxl_list='all_eboxlist_l.fits'
eboxm_list='all_eboxlist_m.fits' esp_nsplinenodes=16
eml_list='all_emllist.fits' esen_mlmin=15

eexpmap:- Executing (routine): eexpmap imageset=pn_image_b1.fits
attitudeset=1566_0554500101_AttHk.ds eventset=PNclean.fits
expimageset='pn_image_b1exp.fits pn_image_b2exp.fits pn_image_b3exp.fits
pn_image_b4exp.fits pn_image_b5exp.fits' withdetcoords=no
withvignetting=yes usefastpixelization=no usedlimap=no attrebin=4
pimin='200 500 1000 2000 4500' pimax='500 1000 2000 4500 12000'  -w 1 -V 4

eexpmap:- eexpmap (eexpmap-4.12)  [xmmsas_20180620_1732-17.0.0] started:
2019-04-09T20:22:27.000

eexpmap:- eexpmap (eexpmap-4.12)  [xmmsas_20180620_1732-17.0.0] ended:
2019-04-09T20:22:33.000

emask:- Executing (routine): emask expimageset=pn_image_b1exp.fits
detmaskset=pn_image_b1mask.fits threshold1=0.3 threshold2=0.5
regionset=region.fits withregionset=no  -w 1 -V 4

emask:- emask (emask-2.15)  [xmmsas_20180620_1732-17.0.0] started:
2019-04-09T20:22:33.000

emask:- emask (emask-2.15)  [xmmsas_20180620_1732-17.0.0] ended:
2019-04-09T20:22:33.000

eexpmap:- Executing (routine): eexpmap imageset=m1_image_b1.fits
attitudeset=1566_0554500101_AttHk.ds eventset=MOS1clean.fits
expimageset='m1_image_b1exp.fits m1_image_b2exp.fits m1_image_b3exp.fits
m1_image_b4exp.fits m1_image_b5exp.fits' withdetcoords=no
withvignetting=yes usefastpixelization=no usedlimap=no attrebin=4
pimin='200 500 1000 2000 4500' pimax='500 1000 2000 4500 12000'  -w 1 -V 4

eexpmap:- eexpmap (eexpmap-4.12)  [xmmsas_20180620_1732-17.0.0] started:
2019-04-09T20:22:33.000

** eexpmap: warning (NoExpoExt), Exposure extension not found

eexpmap:- CCF constituents accessed by the calibration server:

CifEntry{EMOS1, LINCOORD, 18, /Users/jjung11/ccf/EMOS1_LINCOORD_0018.CCF,
1998-01-01T00:00:00.000}

CifEntry{EPN, LINCOORD, 9, /Users/jjung11/ccf/EPN_LINCOORD_0009.CCF,
1998-01-01T00:00:00.000}

CifEntry{RGS1, LINCOORD, 8, /Users/jjung11/ccf/RGS1_LINCOORD_0008.CCF,
1998-01-01T00:00:00.000}

CifEntry{XMM, BORESIGHT, 28, /Users/jjung11/ccf/XMM_BORESIGHT_0028.CCF,
2000-01-01T00:00:00.000}

CifEntry{XMM, MISCDATA, 22, /Users/jjung11/ccf/XMM_MISCDATA_0022.CCF,
1999-01-01T00:00:00.000}

CifEntry{XRT1, XAREAEF, 9, /Users/jjung11/ccf/XRT1_XAREAEF_0009.CCF,
2000-01-13T00:00:00.000}



eexpmap:- eexpmap (eexpmap-4.12)  [xmmsas_20180620_1732-17.0.0] ended:
2019-04-09T20:23:06.000

emask:- Executing (routine): emask expimageset=m1_image_b1exp.fits
detmaskset=m1_image_b1mask.fits threshold1=0.3 threshold2=0.5
regionset=region.fits withregionset=no  -w 1 -V 4

emask:- emask (emask-2.15)  [xmmsas_20180620_1732-17.0.0] started:
2019-04-09T20:23:06.000

emask:- emask (emask-2.15)  [xmmsas_20180620_1732-17.0.0] ended:
2019-04-09T20:23:07.000

eexpmap:- Executing (routine): eexpmap imageset=m2_image_b1.fits
attitudeset=1566_0554500101_AttHk.ds eventset=MOS2clean.fits
expimageset='m2_image_b1exp.fits m2_image_b2exp.fits m2_image_b3exp.fits
m2_image_b4exp.fits m2_image_b5exp.fits' withdetcoords=no
withvignetting=yes usefastpixelization=no usedlimap=no attrebin=4
pimin='200 500 1000 2000 4500' pimax='500 1000 2000 4500 12000'  -w 1 -V 4

eexpmap:- eexpmap (eexpmap-4.12)  [xmmsas_20180620_1732-17.0.0] started:
2019-04-09T20:23:07.000

eexpmap:- CCF constituents accessed by the calibration server:

CifEntry{EMOS2, LINCOORD, 18, /Users/jjung11/ccf/EMOS2_LINCOORD_0018.CCF,
1998-01-01T00:00:00.000}

CifEntry{EPN, LINCOORD, 9, /Users/jjung11/ccf/EPN_LINCOORD_0009.CCF,
1998-01-01T00:00:00.000}

CifEntry{RGS2, LINCOORD, 8, /Users/jjung11/ccf/RGS2_LINCOORD_0008.CCF,
1998-01-01T00:00:00.000}

CifEntry{XMM, BORESIGHT, 28, /Users/jjung11/ccf/XMM_BORESIGHT_0028.CCF,
2000-01-01T00:00:00.000}

CifEntry{XMM, MISCDATA, 22, /Users/jjung11/ccf/XMM_MISCDATA_0022.CCF,
1999-01-01T00:00:00.000}

CifEntry{XRT2, XAREAEF, 1

Message of length 18821064 truncated


Reply 3

Resend
From: Nora Loiseau <xmmhelp@sciops.esa.int>
To: jjung11@alaska.edu
Subject: Re: Edetect_chain not working properly (PR#84822)
Date: Wed Apr 10 11:55:27 2019
Hi,

Performing now srcdisplay with the files you sent me:
> srcdisplay boxlistset=all_emllist.fits imageset=mosaic.ds

looks perfect!

Cheers,

Nora

----
Dr. Nora Loiseau
XMM-Newton User Support Group

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