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From: jjung11@alaska.edu
Subject: Problem generating ancillary file for spectrum
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Date: Tue, 26 Feb 2019 04:39:19 +0100
From: jjung11@alaska.edu
To: xmmhelp@sciops.esa.int
Subject: Problem generating ancillary file for spectrum
Full_Name: Jaewoong Jung
Submission from: (NULL) (193.147.152.102)


Dear XMM helpdesk team,

I was making ancillary file for spectrum. I ran arfgen without problem for EPIC
MOS1 data, but when I ran it for MOS2 , it stopped at 'Opening arf set
m2.arf...' (m2.arf is the ancillary file I was trying to generate)
I tested I could re-run it for MOS1, but it stopped at opening arf set m1.arf
either. I'm not sure why it suddenly stopped to work.

Log is like this:

arfgen spectrumset=m2spec.fits arfset=m2.arf withrmfset=yes rmfset=m2.rmf
badpixlocation=MOS2cleanfs.fits detmaptype=psf
arfgen:- Executing (routine): arfgen spectrumset=m2spec.fits rmfset=m2.rmf
withrmfset=yes arfset=m2.arf detmaptype=psf detmaparray=detmapfile.ds:
detxoffset=1200 detyoffset=1200 withdetbounds=no detxbins=5 detybins=5
withdetbins=no psfenergy=2 filterdss=yes filteredset=filteredpixellist.ds
withfilteredset=no sourcecoords=eqpos sourcex=0 sourcey=0 withsourcepos=no
extendedsource=no modeleffarea=yes modelquantumeff=yes modelfiltertrans=yes
modelcontamination=yes modelee=yes modelootcorr=yes applyxcaladjustment=no
eegridfactor=100 withbadpixcorr=yes badpixlocation=MOS2cleanfs.fits
psfmodel=ELLBETA badpixelresolution=2 withbadpixres=no badpixmaptype=flat
setbackscale=no keeparfset=yes useodfatt=no ignoreoutoffov=yes
crossreg_spectrumset='' crossregionarf=no  -w 1 -V 4
arfgen:- arfgen (arfgen-1.98.3)  [xmmsas_20180620_1732-17.0.0] started: 
2019-02-26T03:25:25.000
arfgen:- Opening spectrumset m2spec.fits...
arfgen:- Closing spectrumset m2spec.fits.
arfgen:- Computing source position from region extent..
arfgen:- CCF constituents accessed by the calibration server:
CifEntry{EMOS2, CONTAMINATION, 1,
/Users/jjung11/ccf/EMOS2_CONTAMINATION_0001.CCF, 2000-01-01T00:00:00.000}
CifEntry{EMOS2, FILTERTRANSX, 15,
/Users/jjung11/ccf/EMOS2_FILTERTRANSX_0015.CCF, 1998-01-01T00:00:00.000}
CifEntry{EMOS2, LINCOORD, 18, /Users/jjung11/ccf/EMOS2_LINCOORD_0018.CCF,
1998-01-01T00:00:00.000}
CifEntry{EMOS2, MODEPARAM, 6, /Users/jjung11/ccf/EMOS2_MODEPARAM_0006.CCF,
1999-01-01T00:00:00.000}
CifEntry{EMOS2, PATTERNLIB, 5, /Users/jjung11/ccf/EMOS2_PATTERNLIB_0005.CCF,
1998-01-01T00:00:00.000}
CifEntry{EMOS2, QUANTUMEF, 21, /Users/jjung11/ccf/EMOS2_QUANTUMEF_0021.CCF,
2002-11-08T00:00:01.000}
CifEntry{EMOS2, TIMECORR, 3, /Users/jjung11/ccf/EMOS2_TIMECORR_0003.CCF,
1998-01-01T00:00:00.000}
CifEntry{RGS2, LINCOORD, 8, /Users/jjung11/ccf/RGS2_LINCOORD_0008.CCF,
1998-01-01T00:00:00.000}
CifEntry{XMM, ABSCOEFS, 4, /Users/jjung11/ccf/XMM_ABSCOEFS_0004.CCF,
1999-01-01T00:00:00.000}
CifEntry{XMM, MISCDATA, 22, /Users/jjung11/ccf/XMM_MISCDATA_0022.CCF,
1999-01-01T00:00:00.000}
CifEntry{XRT2, XAREAEF, 10, /Users/jjung11/ccf/XRT2_XAREAEF_0010.CCF,
2000-01-13T00:00:00.000}


arfgen:- Using a source position in DET coordinates of x=-176 y=445
arfgen:-  The source position in focal plane coords is  theta=92.718
phi=5.10845
arfgen:- Computing detector map bounds from the region selection information
stored in the spectrum ...
arfgen:- detector map binning will be: xbins: 80 ybins: 80
arfgen:- Constructing a psf detector map with  xmin=-16352 xmax=16000 xbins=80
ymin=-16000 ymax=16890 ybins=80
arfgen:- PSF type: 3 [ELLBETA] will be used
arfgen:- Opening arfset m2.arf...

I would appreciate any help.

Thanks,
Jaewoong


Reply 1

Resend
From: Ignacio de la Calle <xmmhelp@sciops.esa.int>
To: jjung11@alaska.edu
Subject: Problem generating ancillary file for spectrum (PR#84683)
Date: Tue Feb 26 15:00:40 2019
Dear Jaewoong Jung,

If you are analyzing an extended source, set extendedsource=yes in the call
to arfgen. If it is a point source, it looks like you extraction region is 
too large.

Regards,

Ignacio de la Calle
XMM-Newton SOC

> Submission from: (NULL) (193.147.152.102)
> 
> 
> Dear XMM helpdesk team,
> 
> I was making ancillary file for spectrum. I ran arfgen without problem for
EPIC
> MOS1 data, but when I ran it for MOS2 , it stopped at 'Opening arf set
> m2.arf...' (m2.arf is the ancillary file I was trying to generate)
> I tested I could re-run it for MOS1, but it stopped at opening arf set
m1.arf
> either. I'm not sure why it suddenly stopped to work.
> 
> Log is like this:
> 
> arfgen spectrumset=m2spec.fits arfset=m2.arf withrmfset=yes rmfset=m2.rmf
> badpixlocation=MOS2cleanfs.fits detmaptype=psf
> arfgen:- Executing (routine): arfgen spectrumset=m2spec.fits rmfset=m2.rmf
> withrmfset=yes arfset=m2.arf detmaptype=psf detmaparray=detmapfile.ds:
> detxoffset=1200 detyoffset=1200 withdetbounds=no detxbins=5 detybins=5
> withdetbins=no psfenergy=2 filterdss=yes filteredset=filteredpixellist.ds
> withfilteredset=no sourcecoords=eqpos sourcex=0 sourcey=0 withsourcepos=no
> extendedsource=no modeleffarea=yes modelquantumeff=yes
modelfiltertrans=yes
> modelcontamination=yes modelee=yes modelootcorr=yes applyxcaladjustment=no
> eegridfactor=100 withbadpixcorr=yes badpixlocation=MOS2cleanfs.fits
> psfmodel=ELLBETA badpixelresolution=2 withbadpixres=no badpixmaptype=flat
> setbackscale=no keeparfset=yes useodfatt=no ignoreoutoffov=yes
> crossreg_spectrumset='' crossregionarf=no  -w 1 -V 4
> arfgen:- arfgen (arfgen-1.98.3)  [xmmsas_20180620_1732-17.0.0] started: 
> 2019-02-26T03:25:25.000
> arfgen:- Opening spectrumset m2spec.fits...
> arfgen:- Closing spectrumset m2spec.fits.
> arfgen:- Computing source position from region extent..
> arfgen:- CCF constituents accessed by the calibration server:
> CifEntry{EMOS2, CONTAMINATION, 1,
> /Users/jjung11/ccf/EMOS2_CONTAMINATION_0001.CCF, 2000-01-01T00:00:00.000}
> CifEntry{EMOS2, FILTERTRANSX, 15,
> /Users/jjung11/ccf/EMOS2_FILTERTRANSX_0015.CCF, 1998-01-01T00:00:00.000}
> CifEntry{EMOS2, LINCOORD, 18, /Users/jjung11/ccf/EMOS2_LINCOORD_0018.CCF,
> 1998-01-01T00:00:00.000}
> CifEntry{EMOS2, MODEPARAM, 6, /Users/jjung11/ccf/EMOS2_MODEPARAM_0006.CCF,
> 1999-01-01T00:00:00.000}
> CifEntry{EMOS2, PATTERNLIB, 5,
/Users/jjung11/ccf/EMOS2_PATTERNLIB_0005.CCF,
> 1998-01-01T00:00:00.000}
> CifEntry{EMOS2, QUANTUMEF, 21,
/Users/jjung11/ccf/EMOS2_QUANTUMEF_0021.CCF,
> 2002-11-08T00:00:01.000}
> CifEntry{EMOS2, TIMECORR, 3, /Users/jjung11/ccf/EMOS2_TIMECORR_0003.CCF,
> 1998-01-01T00:00:00.000}
> CifEntry{RGS2, LINCOORD, 8, /Users/jjung11/ccf/RGS2_LINCOORD_0008.CCF,
> 1998-01-01T00:00:00.000}
> CifEntry{XMM, ABSCOEFS, 4, /Users/jjung11/ccf/XMM_ABSCOEFS_0004.CCF,
> 1999-01-01T00:00:00.000}
> CifEntry{XMM, MISCDATA, 22, /Users/jjung11/ccf/XMM_MISCDATA_0022.CCF,
> 1999-01-01T00:00:00.000}
> CifEntry{XRT2, XAREAEF, 10, /Users/jjung11/ccf/XRT2_XAREAEF_0010.CCF,
> 2000-01-13T00:00:00.000}
> 
> 
> arfgen:- Using a source position in DET coordinates of x=-176 y=445
> arfgen:-  The source position in focal plane coords is  theta=92.718
> phi=5.10845
> arfgen:- Computing detector map bounds from the region selection
information
> stored in the spectrum ...
> arfgen:- detector map binning will be: xbins: 80 ybins: 80
> arfgen:- Constructing a psf detector map with  xmin=-16352 xmax=16000
xbins=80
> ymin=-16000 ymax=16890 ybins=80
> arfgen:- PSF type: 3 [ELLBETA] will be used
> arfgen:- Opening arfset m2.arf...
> 
> I would appreciate any help.
> 
> Thanks,
> Jaewoong
> 
> 


Followup 1

Compose reply
Download message
From: Jaewoong Jung <jjung11@alaska.edu>
Date: Tue, 26 Feb 2019 13:50:09 -0900
Subject: Re: Problem generating ancillary file for spectrum (PR#84683)
To: Ignacio de la Calle <xmmhelp@sciops.esa.int>
--000000000000bbbbbd0582d3e15c
Content-Type: text/plain; charset="UTF-8"

Dear Ignacio,

Thanks for your help.
I recalled that I included 'extendedsource=yes' when I did it for MOS1. But
I forgot it meanwhile.

Regards,
Jaewoong

On Tue, Feb 26, 2019 at 5:00 AM Ignacio de la Calle
<xmmhelp@sciops.esa.int>
wrote:

> Dear Jaewoong Jung,
>
> If you are analyzing an extended source, set extendedsource=yes in the call
> to arfgen. If it is a point source, it looks like you extraction region is
> too large.
>
> Regards,
>
> Ignacio de la Calle
> XMM-Newton SOC
>
> > Submission from: (NULL) (193.147.152.102)
> >
> >
> > Dear XMM helpdesk team,
> >
> > I was making ancillary file for spectrum. I ran arfgen without problem
> for
> EPIC
> > MOS1 data, but when I ran it for MOS2 , it stopped at 'Opening arf set
> > m2.arf...' (m2.arf is the ancillary file I was trying to generate)
> > I tested I could re-run it for MOS1, but it stopped at opening arf set
> m1.arf
> > either. I'm not sure why it suddenly stopped to work.
> >
> > Log is like this:
> >
> > arfgen spectrumset=m2spec.fits arfset=m2.arf withrmfset=yes
rmfset=m2.rmf
> > badpixlocation=MOS2cleanfs.fits detmaptype=psf
> > arfgen:- Executing (routine): arfgen spectrumset=m2spec.fits
> rmfset=m2.rmf
> > withrmfset=yes arfset=m2.arf detmaptype=psf detmaparray=detmapfile.ds:
> > detxoffset=1200 detyoffset=1200 withdetbounds=no detxbins=5 detybins=5
> > withdetbins=no psfenergy=2 filterdss=yes
filteredset=filteredpixellist.ds
> > withfilteredset=no sourcecoords=eqpos sourcex=0 sourcey=0
> withsourcepos=no
> > extendedsource=no modeleffarea=yes modelquantumeff=yes
> modelfiltertrans=yes
> > modelcontamination=yes modelee=yes modelootcorr=yes
> applyxcaladjustment=no
> > eegridfactor=100 withbadpixcorr=yes badpixlocation=MOS2cleanfs.fits
> > psfmodel=ELLBETA badpixelresolution=2 withbadpixres=no
badpixmaptype=flat
> > setbackscale=no keeparfset=yes useodfatt=no ignoreoutoffov=yes
> > crossreg_spectrumset='' crossregionarf=no  -w 1 -V 4
> > arfgen:- arfgen (arfgen-1.98.3)  [xmmsas_20180620_1732-17.0.0]
started:
> > 2019-02-26T03:25:25.000
> > arfgen:- Opening spectrumset m2spec.fits...
> > arfgen:- Closing spectrumset m2spec.fits.
> > arfgen:- Computing source position from region extent..
> > arfgen:- CCF constituents accessed by the calibration server:
> > CifEntry{EMOS2, CONTAMINATION, 1,
> > /Users/jjung11/ccf/EMOS2_CONTAMINATION_0001.CCF,
2000-01-01T00:00:00.000}
> > CifEntry{EMOS2, FILTERTRANSX, 15,
> > /Users/jjung11/ccf/EMOS2_FILTERTRANSX_0015.CCF,
1998-01-01T00:00:00.000}
> > CifEntry{EMOS2, LINCOORD, 18,
/Users/jjung11/ccf/EMOS2_LINCOORD_0018.CCF,
> > 1998-01-01T00:00:00.000}
> > CifEntry{EMOS2, MODEPARAM, 6,
> /Users/jjung11/ccf/EMOS2_MODEPARAM_0006.CCF,
> > 1999-01-01T00:00:00.000}
> > CifEntry{EMOS2, PATTERNLIB, 5,
> /Users/jjung11/ccf/EMOS2_PATTERNLIB_0005.CCF,
> > 1998-01-01T00:00:00.000}
> > CifEntry{EMOS2, QUANTUMEF, 21,
> /Users/jjung11/ccf/EMOS2_QUANTUMEF_0021.CCF,
> > 2002-11-08T00:00:01.000}
> > CifEntry{EMOS2, TIMECORR, 3,
/Users/jjung11/ccf/EMOS2_TIMECORR_0003.CCF,
> > 1998-01-01T00:00:00.000}
> > CifEntry{RGS2, LINCOORD, 8, /Users/jjung11/ccf/RGS2_LINCOORD_0008.CCF,
> > 1998-01-01T00:00:00.000}
> > CifEntry{XMM, ABSCOEFS, 4, /Users/jjung11/ccf/XMM_ABSCOEFS_0004.CCF,
> > 1999-01-01T00:00:00.000}
> > CifEntry{XMM, MISCDATA, 22, /Users/jjung11/ccf/XMM_MISCDATA_0022.CCF,
> > 1999-01-01T00:00:00.000}
> > CifEntry{XRT2, XAREAEF, 10, /Users/jjung11/ccf/XRT2_XAREAEF_0010.CCF,
> > 2000-01-13T00:00:00.000}
> >
> >
> > arfgen:- Using a source position in DET coordinates of x=-176 y=445
> > arfgen:-  The source position in focal plane coords is  theta=92.718
> > phi=5.10845
> > arfgen:- Computing detector map bounds from the region selection
> information
> > stored in the spectrum ...
> > arfgen:- detector map binning will be: xbins: 80 ybins: 80
> > arfgen:- Constructing a psf detector map with  xmin=-16352 xmax=16000
> xbins=80
> > ymin=-16000 ymax=16890 ybins=80
> > arfgen:- PSF type: 3 [ELLBETA] will be used
> > arfgen:- Opening arfset m2.arf...
> >
> > I would appreciate any help.
> >
> > Thanks,
> > Jaewoong
> >
> >
>
> This message is intended only for the recipient(s) named above. It may
> contain proprietary information and/or
> protected content. Any unauthorised disclosure, use, retention or
> dissemination is prohibited. If you have received
> this e-mail in error, please notify the sender immediately. ESA applies
> app

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